PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078165.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 403aa    MW: 44095.6 Da    PI: 8.2123
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.5e-12426225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    + elCr+f+r G C+yGdrCkF H
  XP_011078165.1  4 RKELCRNFQR-GSCQYGDRCKFLH 26
                    789*******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.497229IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-7328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6327IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8626IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPPRKELCRN FQRGSCQYGD RCKFLHASPS PQQSKTNPFG FGMQTSATFQ RTNQQQQMPN  60
PFGFGVQNNN QLRGANNFGS QPNQFKPFEN KWTRFSPINS SSASASRQSE NQPQAPNHKC  120
TDSESCRRVI MEDLENEKPL WKLTCYGHNR NGPCDIVGDI SCEELRALAY DDAKQGKSLQ  180
FIIERERSLL NSKLVEFQNL VQKPHTVSPF GTPSTQNPFG TPSTQNPFGG GSLNAPNINN  240
VVPPPASNFG QLTASLNTGS AAVPNYTFGQ SSIFQNNSQP SNMFQMNNSP FNSSGTSGSQ  300
VPQQSVQRPF FGSASSTSSA INAHSNPFST FANIPTGSAF GKQLDFVSNG PNSASSAIGQ  360
SSIQLNDNLP ANPNVDDSIW TKAEWKWNVG EIPEVPPPDI YIH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078165.10.0PREDICTED: zinc finger CCCH domain-containing protein 46 isoform X2
TrEMBLA0A068V3261e-121A0A068V326_COFCA; Uncharacterized protein
STRINGSolyc12g009390.1.11e-112(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-62C3H family protein